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On my '95 GS-R I didn't cut anything. I used the hole for the radiator overflow tank but the pipe hit the tank. So I took out the overflow tank and got it hot with a space heater and used my foot to bend it so it would clear the pipe.
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"A reasonable man adapts himself to the world around him. An unreasonable man expects the world to adapt to him. Therefore, all progress is achieved by unreasonable men"
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I cut about 2-3" off the side of the short pipe that connects to the throttle body AND 1-2" off the side that meets the rest of the pipe.
It fits better than ever now.
Greg Holden
96 GSR w/Leaking JRSC